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If you have manually copied the files into /etc/ros/rosdep you do not need to run rosdep init anymore.
However without internet the next steps will be a problem. rosdep update is going to pull the rules files from github as well. You will need to copy those files locally, and then modify the sources you have already copied to point to the local files instead of the github urls.
And once rosdep is working, you will not be able to use it as it will try to install missing dependencies via the internet.
if you have ssh access to machines with internet, I highly recommend looking at setting up a web proxy on the machines with external access. Then you can setup a local transparent proxy to forward all web traffic to the proxy.
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