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Typically, you have your catkin pacakges in a src folder, in another folder. Let's call this folder catkin_ws. catkin_ws then is your root folder, so you need to call catkin_make therein.

Make sure, you have called catkin_init_workspace in your src folder before.

Typically, you have your catkin pacakges in a src folder, in another folder. Let's call this folder catkin_ws. catkin_ws then is your root folder, so you need to call catkin_make therein.

Make sure, you have called catkin_init_workspace in your src folder before.

EDIT

catkin_make provides out-of-source builds. So there will not be any executables in src, but in devel. Also, checking the link you provided, I'd say that you only need to put trunk/catkin_pkg stuff in there. The rest is based on the legacy rosbuild build tool and will thus not be built with catkin_make.