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When I set up Fedora 24 recently, I had the same problem. See the notes here: http://answers.ros.org/question/238007/avcodech-no-such-file-fedora-24/

I did openCV 3.1 straight from Github because the catkin auto-dep wouldn't compile. Install Eigen/dev and TBB/dev first. Use the git clone and then go to that folder and run this: cmake -D WITH_TBB=ON -D WITH_EIGEN=ON -D CMAKE_BUILD_TYPE=RELEASE -D BUILD_TESTS=OFF -D BUILD_PERF_TESTS=OFF BUILD_EXAMPLES=OFF .. make && make install

That bit me later when I had to do this for RViz and gazebo: sudo ldconfig /usr/local/lib64 /usr/local/lib

and excluded it from Catkin's pull like this: rosinstall_generator desktop --rosdistro kinetic --deps --wet-only --tar --exclude opencv3 > kinetic-desktop-wet.rosinstall