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Ok, I think I've figured it out:

urdf_parser is depreciated in Groovy, but this is not documented on its wiki page
The latest version of Gazebo (1.3) still requires ros-fuerte-urdfdom, so I had this on my system as well
Somehow when I do rosrun urdf_parser check_urdf robot.urdf it confused my computer into no longer understanding catkin packages, essentially throwing it into "fuerte" mode

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